I have just submitted a question on my myson apollo 30 S which may have the same fault yours. I assume your fault occurs on low and high positions on the temperature selector  switch. The fan timer could be intermitently failing causing the fan motor to stop/start.The fan pressure switch would see this and it would constantly shut down and restart the boiler. Hope I've been of some help.
ken hogg - email arenal@tiscali.co.uk
                
 ken hogg
                
 October 2006