Don't know the Allis Charmers system, but sometimes an "add on" front loader is powered from the trailer tipper pipe or connection, the latter fitted with a blanking plug if not piped up. To operate the loader(or tipper) a knob (below the seat on a Ford) is pulled out isolating the three point linkage and putting the h/d pressure to this other outlet.
Is your h/d pump internal, driven with the pto.?
A bit obvious, but if so could you perhaps have knocked it out of gear?
Mr. Toad
August 2008