I had the same problem. Eventually it appeared to be the tamper circuit for the external siren (this one is not marked as Tamp on the main board, but rather as SCB A and T). So, when in troubles, follow Dave's suggestion - try to put original U-loops in these 3 circuits and then close the main panel lid to engage it's own tamper switch. Also ensure that this switch is working fine - I found out that mine can make a clicking sound and still remain open. If necessary, try to expand the spring on top of it.
BTW on the 4th page of the Engineer's Manual there is a diagram of all necessary close circuits (factory defaults) to ensure the panel is working.
Alex J
August 2008